SOLICITATION NOTICE
66 -- LoopSeq Single Molecule counting long-read 16S
- Notice Date
- 12/17/2020 10:56:56 AM
- Notice Type
- Combined Synopsis/Solicitation
- NAICS
- 541380
— Testing Laboratories
- Contracting Office
- USDA ARS NEA AAO ACQ/PER PROP BELTSVILLE MD 20705 USA
- ZIP Code
- 20705
- Solicitation Number
- 1021025
- Response Due
- 12/23/2020 6:00:00 AM
- Archive Date
- 12/23/2020
- Point of Contact
- MICHAEL K POOLE, Phone: 202-251-3405
- E-Mail Address
-
MICHAEL.POOLE@USDA.GOV
(MICHAEL.POOLE@USDA.GOV)
- Small Business Set-Aside
- SBA Total Small Business Set-Aside (FAR 19.5)
- Description
- These samples will be provided to the vendor in 3 to 5 batches (48 or 96 samples per batch) over the period of 18 months (from Dec 15, 2020 to May 14, 2022) in dry ice with overnight express delivery. The full-length amplification and amplicon sequencing will be performed at 150 bp/read (pair-end). The minimum yield will be 10 million pair-end reads per sample with Q30 > 80%. Initial analysis services include that the sequence quality check against standard quality control parameters, full-length 16S assembly, and annotation against public databases such as GreenGene and Silva databases.� The deliverables will include raw sequences, sequences of assembled and clustered molecules (minimum 10,000 full-length clustered molecule per sample), alpha and beta diversity in tsv or excel format, amplicon sequence variant (ASV) feature tables,� count/taxonomy tables (from species to phylum levels), rarefaction curve data, a descriptive summary report, and all intermediate files.
- Web Link
-
SAM.gov Permalink
(https://beta.sam.gov/opp/a344fc3eb38544d3bc56d8f014d88470/view)
- Place of Performance
- Address: Beltsville, MD 20705, USA
- Zip Code: 20705
- Country: USA
- Zip Code: 20705
- Record
- SN05877018-F 20201219/201217230118 (samdaily.us)
- Source
-
SAM.gov Link to This Notice
(may not be valid after Archive Date)
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