SOLICITATION NOTICE
D -- Partek Genomics Suite Software and Licence, brand name or equal
- Notice Date
- 8/17/2011
- Notice Type
- Presolicitation
- NAICS
- 511210
— Software Publishers
- Contracting Office
- US Army Medical Research Acquisition Activity, ATTN: MCMR-AAA, 820 Chandler Street, Frederick, MD 21702-5014
- ZIP Code
- 21702-5014
- Solicitation Number
- W81XWH-11-T-0538
- Response Due
- 8/17/2011
- Archive Date
- 10/16/2011
- Point of Contact
- Julielb18, 301-619-2189
- E-Mail Address
-
US Army Medical Research Acquisition Activity
(julie.l.burns@us.army.mil)
- Small Business Set-Aside
- N/A
- Description
- PRESOLICITATION NOTICE CLASSIFICATION CODE: D SUBJECT: Partek Genomics Suite Software and Licence, brand name or equal SOLICITATION NUMBER: W81XWH-11-T-0538 QUESTIONS TO BE RECEIVED BY: 5:00pm EST, Friday, 19 Aug 2011 RESPONSE DATE: 5:00pm EST Monday, 22 August 2011 CONTACT POINTS: Julie Burns, Contract Specialist, julie.l.burns@us.army.mil Competition Retrictions: Open to all North American Industry Classification System (NAICS) code is 511210. Contract Type: Firm Fixed Price Period of performance: 01 Sept 2011 - 31 Aug 2012, plus 4 one-year options Shipping: FOB destination, Aberdeen Proving Ground, MD 21010-5400 Evaluation Criteria: Lowest Price, Technology acceptable NOTE: The solicitation document and incorporated provisions and clauses are those in effect through Federal Acquisition Circular (FAC) 2001-27. ++++++ DESCRIPTION: The United States Army Medical Research Institute of Chemical Defense (USAMRICD) has a requirement for the following: The following consumables are required to maintain proper functioning of the GS Junior System currently installed at the Armed Forces DNA Identification Laboratory. 1. Part no. 1010FS Brand Name: Partek Product: Partek Genomics Suite (Concurrent License) Quantity: 1 The Partek Genomics Suite, part no. 1010FS brand name or equal software shall be a comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably extract biological signals from noisy data. The software shall support all microarray and next generation sequencing technologies including gene expression and digital gene expression (DGE), exon/alternative splicing and RNA-Seq, copy number and association, ChIP-chip, ChIP-seq, and microRNA in a single software package, allowing for analysis of multiple applications in one complete solution. With this concurrent or "floating" license, users can share any number of software licenses between multiple workstations through a computer network. Application Compatible Microarray Analysis in Partek Genomics Suite Gene Expression & Digital Gene ExpressionYes Alternative SplicingYes Regulation (ChIP-Chip, ChIP-Seq, & microRNA)Yes Copy NumberYes Transcript-Driven RNA Sequencing AnalysisYes Association StudiesYes a. Genomic Features - Affymetrix GeneChip-compatible for gene expression, exon expression, chromosomal copy number, tiling, and SNP analysis - Automatically connect to genomic databases and third-party applications, such as NetAffx, UCSC Genome Browser, Ingenuity's IPA, etc. - Exon Analysis - Chromosomal Copy Number Analysis - SNP Analysis - Tiling Analysis: - Genomic smoothing though HMM, Gaussian, Mean Shift, and Median Smoothing methods - Custom Genomic Visualizations: b. Spreadsheet Features - No limit to the number of rows or columns in the spreadsheet - Import from flat files, Excel, or any ODBC compliant database - Data filtering by rows or columns - Visualization includes scatter plot, histogram, dot plot, intensity plot, star plot, profile plot, box and whiskers, normal and uniform probability plots, Venn diagram, XY plot, and barchart - Graphic properties can be rendered by user-defined settings - Image output formats include GIF, TIFF, PNG, JPEG, PPM, and SVG - External link manager allows for user-defined third party connection preferences c. Statistical Features - Summary statistics, measures of association - Data transformations including scaling, normalization, ranks and scores, smoothing, and distance and similarity measures - Parametric tests include one sample t-test, one sample z-test, two sample t-test (equal and unequal variance), ANOVA (N-way, repeated measures, mixed-model, ANCOVA, etc), Survival Analysis - Nonparametric test include Mann-Whitney, Kruskal-Wallis, Chi-Square, Fisher Exact, McNemar, Friedman, Quade, Kolmogorov-Smirnov, and multiple test corrections for p- values - Other analysis methods include false discovery rate, principal components analysis, multidimensional scaling, correspondence analysis, cluster analysis, similarity matching, predictive modeling, variable selection, K-nearest neighbor classifier, nearest centroid classifier, discriminant analysis, multi-layer perceptron, and multiple prototype classifier c. Software Features - Inter-process communication - Tutorials and documentation - Flexible licensing options - Supported on Windows Vista/XP/2000, Linux and Intel based Macintosh +++++++++ 2. Part no. 1010NS Brand Name: Partek Product: Partek Genomics Suite subscription (Node Locked License) Quantity: 2 or equal With these node-locked licenses, a single instance of an application can run on a specific machine. Node-locked licenses are directly tied to the hardware of the machine and do not need to connect to a license server. All responsible sources may submit a quote, which shall be considered by the agency. The competitive solicitation, solicitation amendments and all questions and answers relating to this procurement shall be made available via the Internet at https://acquisition.army.mil/asfi/ or https://www.fedbizopps.gov. The solicitation is anticipated for release to the vendor community on or about, Wednesday, 17 August 2011 and will be available until 5:00pm EST Monday, 22 August 2011. Specifications of the requirement are provided in solicitation: W81XWH-11-T-0538. Potential offerors are responsible for accessing the website. Interested parties must respond to the solicitation in order to be considered for award of any resultant contract. To be eligible for an award, offerors MUST be registered with the Central Contractor Registry at https://ccr.gov/ and may have completed its representations and certification found at https://orca.bpn.gov/. POC: Julie Burns, Contract Specialist email address: julie.l.burns@us.army.mil All questions must be in writing and received by 5:00pm EST Friday, 19 Aug 2011 via email. Only one set of questions shall be received from each offeror. Numerous emails from one offeror shall not be accepted. Telephone requests will not be honored and bidder lists will not be maintained. All interested parties shall provide their quote to Julie Burns, via email at julie.l.burns@us.army.mil by 5:00pm EST Monday, 22 August 2011.
- Web Link
-
FBO.gov Permalink
(https://www.fbo.gov/spg/USA/USAMRAA/DAMD17/W81XWH-11-T-0538/listing.html)
- Place of Performance
- Address: US Army Medical Research Acquisition Activity ATTN: MCMR-AAA, 820 Chandler Street Frederick MD
- Zip Code: 21702-5014
- Zip Code: 21702-5014
- Record
- SN02538908-W 20110819/110818000346-231936bd70498a35cc227e02b8ffb582 (fbodaily.com)
- Source
-
FedBizOpps Link to This Notice
(may not be valid after Archive Date)
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